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First steps towards the development of epigenetic biomarkers in female cheetahs (Acinonyx jubatus).
Life 6:920.
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New insights into the relationships within subtribe Scorzonerinae (Cichorieae, Asteraceae) using hybrid capture phylogenomics (Hyb-Seq).
Frontiers in Plant Science 13:851716.
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Current Biology 32:3628-3635.e3.
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Eating in a losing cause: limited benefit of modified macronutrient consumption following infection in the oriental cockroach Blatta orientalis.
BMC Ecology and Evolution 22:67.
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A global agenda for advancing freshwater biodiversity research.
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Plastid phylogenomics of the Gynoxoid group (Senecioneae, Asteraceae) highlights the importance of motif-based sequence alignment amid low genetic distances.
American Journal of Botany 108: 2235-2256.
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Early preantral follicles of the domestic cat express gonadotropin and sex steroid signalling potential.
Biology of Reproduction 106:95-107.
2021
[172] Grünfeld L, M Mola, M Wulf, S Hempel, SD Veresoglou
Disentangling the relative importance of spatio-temporal parameters and host specificity in shaping arbuscular mycorrhizal fungus communities in a temperate forest
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New Phytologist 232:1917-1929.
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Productivity and change in fish and squid in the Southern Ocean.
Frontiers in Ecology and Evolution 10.3389/fevo.2021.624918.
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How the ‘kitome’ influences the characterization of bacterial communities in lepidopteran samples with low bacterial biomass.
Journal of Applied Microbiology 130:1780-1793.
[168] Heeger F, EC Bourne, C Wurzbacher, E Funke, A Lipzen, G He, V Ng, IV Grigoriev, D Schlosser, MT Monaghan (2021)
Evidence for lignocellulose-decomposing enzymes in the genome and transcriptome of the aquatic hyphomycete Clavariopsis aquatica.
Journal of Fungi 7:854.
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Anthropogenic activities are associated with shorter telomeres in chicks of Adélie penguin (Pygoscelis adeliae).
Polar Biology 44:1391-1399.
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Temporal dynamics of freshwater planktonic parasites inferred using a DNA metabarcoding time-series.
Parasitology 148:1602-1611.
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Three mitochondrial genomes of early-winged insects (Ephemeroptera: Baetidae and Leptophlebiidae).
Mitochondrial DNA Part B: Resources 6:2969-2971.
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PriSeT: Efficient de novo primer discovery.
Proceedings of the 12th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics Article No.:2, pp. 1-12.
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Signalling pathways and mechanistic cues highlighted by transcriptomic analysis of primordial, primary, and secondary ovarian follicles in domestic cat.
Scientific Reports 11:2683
[161] Muller LAH, M-B Ballhausen, DR Andrade-Linares, L Pinek, P Golubeva, MC Rillig (2021)
Fungus–bacterium associations are widespread in fungal cultures isolated from a semi-arid natural grassland in Germany.
FEMS Microbiology Ecology 97:fiab059.
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Bacteria primed by antimicrobial peptides develop tolerance and persist.
PLoS Pathogens 17:e1009443.
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The virus–host interface: molecular interactions of Alphacoronavirus‐1 variants from wild and domestic hosts with mammalian aminopeptidase N.
Molecular Ecology 30:2607-2625.
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Legacy effects of pre-crop plant functional group on fungal root symbionts of barley.
Ecological Applications 31:e2378
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Towards complete and error-free genome assemblies of all vertebrate species.
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Trade-offs between reducing complex terminology and producing accurate interpretations from environmental DNA.
Molecular Ecology 30:4601-4605.
[155] He S, T Sieksmeyer, Y Che, MA Esparza Mora, P Stiblik, R Banasiak, MC Harrison, J Šobotník, Z Wang, PR Johnston, DP McMahon (2021)
Evidence for reduced immune gene diversity and activity during the evolution of termites.
Proceedings of the Royal Society B 288:10.1098/rspb.2020.3168
2020
[154] Alquezar‐Planas DE, U Löber, P Cui, C Quedenau, W Chen, AD Greenwood (2020)
DNA sonication inverse PCR for genome-scale analysis of uncharacterized flanking sequences.
Methods in Ecology and Evolution 12:182-195.
[153] Pöppe J, K Bote, A Ramesh, J Murugaiyan, B Kuropka, M Kühl, PR Johnston, U Roesler, O Makarova (2020)
Selection for resistance to a glyphosate-containing herbicide in Salmonella enterica does not result in a sustained activation of the tolerance response or increased cross-tolerance and cross-resistance to clinically important antibiotics.
Applied and Environmental Microbiology 10.1128/AEM.01204-2
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Global diversification dynamics since the Jurassic: low dispersal and habitat-dependent evolution explain hotspots of diversity and shell disparity in river snails (Viviparidae).
Systematic Biology 69:944-961.
[151] Bracamonte SE, K Knopf, MT Monaghan (2020)
Encapsulation of Anguillicola crassus reduces the abundance of adult parasite stages in the European eel (Anguilla anguilla).
Journal of Fish Diseases 10.1111/jfd.13301.
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Overcoming the obstacles faced by early career researchers in marine science: lessons from the Marine Ecosystem Assessment for the Southern Ocean.
Frontiers in Marine Science 7:692.
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Fungal communities in groundwater springs along the volcanic zone of Iceland.
Inland Waters 10:418-427.
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Legacy of a butterfly’s parental microbiome in offspring performance.
Applied and Environmental Microbiology 10.1128/AEM.00596-20
[147] Brito C, S Torres Vilaça, A Luzia Lacerda, R Maggioni, MÂ Marcovaldi, G Vélez-Rubio, M Carneiro Proietti (2020)
Combined use of mitochondrial and nuclear genetic markers further reveal immature marine turtle hybrids along the South Western Atlantic.
Genetics and Molecular Biology 10.1590/1678-4685-gmb-2019-0098
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Genomic evidence of recent hybridization between sea turtles at Abrolhos Archipelago and its association to low reproductive output.
Scientific Reports 10:12847.
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New genetic insights about hybridization and population structure of hawksbill and loggerhead turtles from Brazil.
Journal of Heredity 111:444–456.
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Moderate phosphorus additions consistently affect community composition of arbuscular mycorrhizal fungi in tropical montane forests in southern Ecuador.
New Phytologist 227:1505.
[143] Ballhausen M, R Hewitt, MC Rillig (2020)
Mimicking climate warming effects on Alaskan soil microbial communities via gradual temperature increase.
Scientific Reports 10:8533.
[142] Paniagua Voirol LR, G Valsamakis, V Lortzing, A Weinhold, PR Johnston, NE Fatouros, R Kunze, M Hilker (2020)
Plant responses to insect eggs are not induced by egg‐associated microbes, but by a secretion attached to the eggs.
Plant, Cell, and Environment 43:1815-1826.
[141] Tikochinski Y, C Carreras, G Tikochinski, ST Vilaça (2020)
Population-specific signatures of intra-individual mitochondrial DNA heteroplasmy and their potential evolutionary advantages.
Scientific Reports 10:211.
[140] Bourne EC, PR Johnston, E Funke, MT Monaghan (2020)
Gene expression analysis of litter-associated fungi using RNA-seq.
Methods to Study Litter Decomposition (eds. F Bärlocher, M Gessner, M Graça), Springer, pp. 355-367.
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Revisiting the phylogenetic position of Caullerya mesnili (Ichthyosporea), a common Daphnia parasite, based on 22 protein-coding genes.
Molecular Phylogenetics and Evolution 151:106891.
[138] Rodríguez-Rojas A, JJ Kim, PR Johnston, O Makarova, M Eravci, C Weise, R Hengge, J Rolff (2020)
Non-lethal exposure to H2O2 boosts bacterial survival and evolvability against oxidative stress.
PLoS Genetics 16:e1008649.
[137] Bellinvia S, PR Johnston, S Mbedi, O Otti (2020)
Mating changes the genital microbiome in both sexes of the common bedbug Cimex lectularius across populations.
Proc Roy Soc B 287 10.1098/rspb.2020.0302
[136] El Shazely B, G Yu, PR Johnston, J Rolff (2020)
Resistance evolution against antimicrobial peptides in Staphylococcus aureus alters pharmacodynamics beyond the MIC.
Frontiers in Microbiology 10.3389/fmicb.2020.00103
[135] He S, PR Johnston, DP McMahon (2020)
Analyzing immunity in non-model insects using de novo transcriptomics.
Immunity in Insects (eds. F Sandrelli, G Tettamanti), Springer, pp. 35-51.
[134] Bellinvia S, PR Johnston, K Reinhardt, O Otti (2020)
Bacterial communities of the reproductive organs of virgin and mated common bedbugs, Cimex lectularius.
Ecological Entomology 45:142-154.
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Generalist Eimeria species in rodents: Multilocus analyses indicate inadequate resolution of established markers.
Ecology and Evolution 10:1378-1389.
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Gene expression response to a nematode parasite in novel and native eel hosts.
Ecology and Evolution 9:13069-13084.
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Spatial structuring and life history connectivity of Antarctic silverfish along the southern continental shelf of the Weddell Sea.
Marine Ecology Progress Series 624:195-212.
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Immune gene regulation in the gut during metamorphosis in a holo- versus a hemimetabolous insect.
Philosophical Transactions of the Royal Society B 374: 10.1098/rstb.2019.0073.
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Complete metamorphosis of insects.
Philosophical Transactions of the Royal Society B 374: 10.1098/rstb.2019.0063.
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Combining the 5.8S and ITS2 to improve classification of fungi.
Methods in Ecology and Evolution 10:1702-1711.
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An empirical assessment of a single family‐wide hybrid capture locus set at multiple evolutionary timescales in Asteraceae.
Applications in Plant Sciences 7:e11295.
[126] Elabed H, E González-Tortuero, C Ibacache-Quiroga, A Bakhrouf, PR Johnston, K Gaddour, J Blázquez, A Rodríguez-Rojas (2019)
Seawater salt-trapped Pseudomonas aeruginosa survives for years and gets primed for salinity tolerance.
BMC Microbiology 19:142.
[125] El Shazely B, A Urbański, PR Johnston, J Rolff (2019)
In vivo exposure of insect AMP resistant Staphylococcus aureus to an insect immune system.
Insect Biochemistry and Molecular Biology 110:60-68.
[124] Degrune F, K Dumack, AM Fiore-Donno, M Bonkowski, MA Sosa-Hernández, M Schloter, T Kautz, D Fischer, MC Rillig (2019)
Distinct communities of Cercozoa at different soil depths in a temperate agricultural field.
FEMS Microbiology Ecology 95:fiz041.
[123] Stöck M, F Fakharzadeh, H Kuhl, B Rozenblut-Kościsty, S Leinweber, R Patel, M Ebrahimi, S Voitel, JF Schmidtler, HG Kami, M Ogielska, DW Förster (2019)
Shedding light on a secretive Tertiary Urodelean relict: hynobiid salamanders (Paradactylodon persicus s.l.) from Iran, illuminated by phylogeographic, developmental, and transcriptomic data.
Genes 10:306.
[122] Seeber PA, GK McEwen, U Löber, DW Förster, ML East, J Melzheimer, AD Greenwood (2019)
Terrestrial mammal surveillance using hybridization capture of environmental DNA from African waterholes.
Molecular Ecology Resources 19:1486-1496.
[121] Mora D, N Abarca, S Proft, JH Grau, N Enke, J Carmona, O Skibbe, R Jahn, J Zimmermann (2019)
Morphology and metabarcoding: a test with stream diatoms from Mexico highlights the complementarity of identification methods.
Freshwater Science 38:448-464.
[120] Vilaça ST, CS Lima, CJ Mazzoni, FR Santos, B de Thoisy (2019)
Manatee genomics supports a special conservation area along the Guianas coastline under the influence of the Amazon River plume.
Estuarine, Coastal and Shelf Science 226:106286.
[119] Bracamonte SE, PR Johnston, K Knopf, MT Monaghan (2019)
Experimental infection with Anguillicola crassus alters immune gene expression in both spleen and head kidney of the European eel (Anguilla anguilla).
Marine Genomics 45:28-37.
2018
[118] Darwall W, V Bremerich, A De Wever, AI Dell, J Freyhof, MO Gessner, H‐P Grossart, I Harrison, K Irvine, SC Jähnig, JM Jeschke, JJ Lee, C Lu, AM Lewandowska, MT Monaghan, JC Nejstgaard, H Patricio, A Schmidt‐Kloiber, SN Stuart, M Thieme, K Tockner, E Turak, O Weyl (2018)
The Alliance for Freshwater Life: A global call to unite efforts for freshwater biodiversity science and conservation.
Aquatic Conservation: Marine and Freshwater Ecosystems 28:1015-1022.
[117] Lu Y, PR Johnston, SR Dennis, MT Monaghan, U John, P Spaak, J Wolinska (2018)
Daphnia galeata responds to the exposure to an ichthyosporean gut parasite by down-regulation of immunity and lipid metabolism.
BMC Genomics 19:932.
[116] Gattolliat J-L, S Rutschmann, MT Monaghan, M Sartori (2018)
From molecular hypotheses to valid species: description of three endemic species of Baetis (Ephemeroptera: Baetidae) from the Canary Islands.
Arthropod Systematics and Phylogeny 76:509-528.
[115] Makarova O, PR Johnston, A Rodriguez-Rojas, B El Shazely, J Moreno Morales, J Rolff (2018)
Genomics of experimental adaptation of Staphylococcus aureus to a natural combination of insect antimicrobial peptides.
Scientific Reports 8:15359.
[114] Altmann S, JM Muino, V Lortzing, R Brandt, A Himmelbach, L Altschmied, M Hilker (2018)
Transcriptomic basis for reinforcement of elm anti‐herbivore defense mediated by insect egg deposition.
Molecular Ecology 27:4901-4915
[113] González-Tortuero E, J Rodríguez-Beltrán, R Radek, J Blázquez, A Rodríguez-Rojas (2018)
Clay-induced DNA breaks as a path for genetic diversity, antibiotic resistance, and asbestos carcinogenesis.
Scientific Reports 8:8504.
[112] Pecoraro C, M Babbucci, R Franch, C Rico, C Papetti, E Chassot, N Bodin, A Cariani, L Bargelloni, F Tinti (2018)
The population genomics of yellowfin tuna (Thunnus albacares) at global geographic scale challenges current stock delineation.
Scientific Reports 8:13890.
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Degradation and remobilization of endogenous retroviruses by recombination during the earliest stages of a germ-line invasion.
Proceedings of the National Academy of Sciences USA 115:8609-8614.
[110] Heeger F, EC Bourne, C Baschien, A Yurkov, B Bunk, C Spröer, J Overmann, CJ Mazzoni, MT Monaghan (2018)
Long-read DNA metabarcoding of ribosomal rRNA in the analysis of fungi from aquatic environments.
Molecular Ecology Resources 18:1500-1514.
[109] Sosa-Hernández MA, J Roy, S Hempel, MC Rillig (2018)
Evidence for subsoil specialization in arbuscular mycorrhizal fungi.
Frontiers in Ecology and Evolution 10.3389/fevo.2018.00067.
[108] Weyrich A, M Jeschek, KT Schrapers, D Lenz, TH Chung, K Rübensam, S Yasar, M Schneemann, S Ortmann, K Jewgenow, J Fickel (2018)
Diet changes alter paternally inherited epigenetic pattern in male Wild guinea pigs.
Environmental Epigenetics 4:dvy011.
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Novel divergent polar bear-associated mastadenovirus recovered from a deceased juvenile polar bear.
mSphere 3:e00171-18.
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Bioinformatic workflows for generating complete plastid genome sequences — an example from Cabomba (Cabombaceae) in the context of the phylogenomic analysis of the water-lily clade.
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Subsoil arbuscular mycorrhizal fungal communities in arable soil differ from those in topsoil.
Soil Biology and Biochemistry 117:83-86.
[104] Camenzind T, Hammer EC, Lehmann J, Solomon D, Horn S, Rillig MC, S Hempel (2018)
Arbuscular mycorrhizal fungal and soil microbial communities in African Dark Earths.
FEMS Microbiology Ecology 94:fiy033.
[103] He S, Johnston PR, Kuropka B, Lokatis S. Weise C, Plarre R, Kunte H-J, McMahon DP (2018)
Termite soldiers contribute to social immunity by synthesizing potent oral secretions.
Insect Molecular Biology 27:564-576.
[102] Fuselli S, Baptista RP, Panziera A, Magi A, Guglielmi S, Tonin R, Benazzo A, Bauzer LG, Mazzoni CJ, Bertorelle G (2018)
A new hybrid approach for MHC genotyping: high-throughput NGS and long read MinION nanopore sequencing, with application to the non-model vertebrate Alpine chamois (Rupicapra rupicapra).
Heredity 10.1038/s41437-018-0070-5.
[101] Blankers T, Vilaça ST, Waurick I, Gray DA, Hennig RM, Mazzoni CJ, Mayer F, Berdan EL (2018)
Demography and selection shape transcriptomic divergence in field crickets.
Evolution 72:553-567.
[100] Hilgers L, Hartmann S, Hofreiter M, von Rintelen T (2018)
Novel genes, ancient genes, and gene co-option contributed to the genetic basis of the radula, a molluscan innovation.
Molecular Biology and Evolution 35:1638–1652.
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Recovering genomics clusters of secondary metabolites from lakes using genome-resolved metagenomics.
Frontiers in Microbiology 9:251.
[98] Bálint M, Márton O, Schatz M, Düring R-A, Grossart H-P (2018)
Proper experimental design requires randomization/balancing of molecular ecology experiments
Ecology and Evolution 8:1786-1793.
[97] Escalera-Zamudio M, Taboadada B, Rojas-Anaya E, Löber U, Loza-Rubio E, Arias CF, Greenwood AD (2018)
Viral communities among sympatric vampire bats and cattle.
EcoHealth 15:132-142.
2017
[96] Menke S, M Meier, S Sommer (2017)
Shifts in the gut microbiome observed in wildlife faecal samples exposed to natural weather conditions: lessons from time‐series analyses using next‐generation sequencing for application in field studies.
Methods in Ecology and Evoluion 2:1080-1087.
[95] Wasimuddin, Menke S, Melzheimer J, Thalwitzer S, Heinrich S, Wachter B, Sommer S (2017)
Gut microbiomes of free-ranging and captive Namibian cheetahs: Diversity, putative functions and occurrence of potential pathogens.
Molecular Ecology 26:5515-5527.
[94] Lesniak I, Franz M, Heckmann I, Greenwood AD, Hofer H, Krone O (2017)
Surrogate hosts: Hunting dogs and recolonizing grey wolves share their endoparasites.
International Journal for Parasitology: Parasites and Wildlife 6:278-286.
[93] Uliano-Silva M, Dondero F, Otto TD, Costa I, Lima NCB, Americo JA, Mazzoni CJ, Prosdocimi F, de Freitas Rebelo M. (2017)
A hybrid-hierarchical genome assembly strategy to sequence the invasive golden mussel Limnoperna fortunei.
GigaScience 7:gix128.
[92] TA Maia, ST Vilaça, LR Silva, FR Santos, GPM Dantas (2018)
DNA sampling from eggshells and microsatellite genotyping in rare tropical birds: Case study on Brazilian Merganser.
Genetics and Molecular Biology 40:808-812.
[91] Roy J, Reichel R, Brüggemann N, Hempel S, Rillig MC (2017)
Succession of arbuscular mycorrhizal fungi along a 52-year agricultural recultivation chronosequence.
FEMS Microbial Ecology 93:fix102.
[90] Rojas-Jimenez K, Wurzbacher C, Bourne EC, Chiuchiolo A, Priscu JC, Grossart H-P (2017)
Early diverging lineages within Cryptomycota and Chytridiomycota dominate the fungal communities in ice-covered lakes of the McMurdo Dry Valleys, Antarctica.
Scientific Reports 7:15348.
[89] Heitlinger E, S Ferreira, D Thierer, H Hofer, ML East (2017)
The intestinal eukaryotic and bacterial biome of spotted hyenas: the impact of social status and age on diversity and composition
Frontiers in Cellular and Infection Microbiology 7:262.
[88] Mestre M, Ferrera I, Borrull E, Ortega-Retuerta E, Mbedi S, Grossart H-P, Sala MM (2017)
Spatial variability of marine bacterial and archaeal communities along the particulate matter continuum.
Molecular Ecology 26:6827-6840.
[87] Schwensow NI, Detering H, Pederson S, Mazzoni CJ, Sinclair R, Peacock D, Kovaliski J, Cooke B, Fickel J, Sommer S (2017)
Resistance to RHD virus in wild Australian rabbits: comparison of susceptible and resistant individuals using a genome‐wide approach.
Molecular Ecology 26:4551–4561.
[86] Watanabe K, Monaghan MT (2017)
Comparative tests of the species-genetic diversity correlation at neutral and non-neutral loci in four species of stream insect.
Evolution 71:1755-1764.
[85] Zanchi C, Johnston PR, Rolff J. 2017.
Evolution of defence cocktails: Antimicrobial peptide combinations reduce mortality and persistent infection.
Molecular Ecology 26:5334–5343.
[84] Gruenstaeudl M, Nauheimer L, Borsch T (2017)
Plastid genome structure and phylogenomics of Nymphaeales: conserved gene order and new insights into relationships
Plant Systematics and Evolution 303:1251-1270.
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Integrating chytrid fungal parasites into plankton ecology. Research gaps and needs.
Environmental Microbiology 19:3802-3822.
[82] Honnen A-C, Monaghan MT (2017)
City-dwellers and country folks: Lack of population differentiation along an urban-rural gradient in the mosquito Culex pipiens (Diptera: Culicidae).
Journal of Insect Science 17:107.
[81] Wurzbacher C, Attermeyer K, MT Kettner, C Flintrop, N Warthmann, Hilt S, Grossart H-P, Monaghan MT (2017)
DNA metabarcoding of unfractionated water samples relates phyto-, zoo- and bacterioplankton dynamics and reveals a single-taxon bacterial bloom.
Environmental Microbiology Reports 9:383–388.
[80] Berdan EL, Finck J, Johnston PR, Waurick I, Mazzoni CJ, Mayer F (2017)
Transcriptome profiling of ontogeny in the acridid grasshopper Chorthippus biguttulus.
PLoS One 12:e0177367.
[79] Makarova O, Johnston PR, Walther B, Rolff J, Roesler U (2017)
Complete genome sequence of the disinfectant susceptibility testing reference strain Staphylococcus aureus subsp. aureus ATCC 6538.
Genome Announcements 5:e00293-17.
[78] Makarova O, Johnston PR, Walther B, Rolff J, Roesler U (2017)
Complete genome sequence of the livestock-associated Methicillin-resistant strain Staphylococcus aureus subsp. aureus 08S00974 (Sequence Type 398).
Genome Announcements 5:e00294-17.
[77] Wurzbacher C, Fuchs A, Attermeyer K, Frindte K, Grossart H-P, Hupfer M, Casper P, Monaghan MT (2017)
Shifts among Eukarya, Bacteria, and Archaea define the vertical organization of a lake sediment.
Microbiome 5:41.
[76] Bonada N, SM Carlson, T Datry, D Finn, C Leigh, DA Lytle, Monaghan MT, PA Tedesco (2017)
Genetic, evolutionary and biogeographical processes in intermittent rivers and ephemeral streams.
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The summary‐likelihood method and its implementation in the Infusion package.
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Very high MHC Class IIB diversity without spatial differentiation in the mediterranean population of greater Flamingos.
BMC Evolutionary Biology 17:56.
[73] Soares LS, Bolten AB, Wayne ML, Vilaça ST, Santos FR, dei Marcovaldi MAG, Bjorndal KA (2017)
Comparison of reproductive output of hybrid sea turtles and parental species.
Marine Biology 164:9.
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Colonization and diversification of aquatic insects on three Macaronesian archipelagos using 59 nuclear loci derived from a draft genome.
Molecular Phylogenetics and Evolution 107:27-38.
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Canine distemper virus in the Serengeti ecosystem: molecular adaptation to different carnivore species.
Molecular Ecology 26:2111–2130.
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DiscoMark: Nuclear marker discovery from orthologous sequences using draft genome data.
Molecular Ecology Resources 17:257–266.
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High adaptive variability and virus-driven selection on Major Histocompatibility Complex (MHC) genes in invasive wild rabbits in Australia
Biological Invasions 19:1255–1271.
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Metabarcoding-based fungal diversity on coarse and fine particulate organic matter in a first-order stream in Nova Scotia, Canada
F1000 Research 4:1378.
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Evolutionary relationships among extinct and extant sloths: the evidence of mitogenomes and retroviruses
Genome Biology and Evolution 8:607-621.
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Detection of signal recognition particle (SRP) RNAs in the nuclear ribosomal internal transcribed spacer 1 (ITS1) of three lineages of ectomycorrhizal fungi (Agaricomycetes, Basidiomycota).
MycoKeys 13:21-33.
[65] Schroer S, Felsmann K, Hölker F, Mummert S, Monaghan MT, Wurzbacher C, Premke K (2016)
The impact of outdoor lighting on ecosystem function ? gaining information with a Citizen Science approach using a questionnaire.
Frontiers in Environmental Science 10.3389/conf.FENVS.2016.01.00008.
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Development of microsatellite markers for Crepis mollis (Asteraceae)
Applications in Plant Sciences 4:1600022.
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The complete mitochondrial genome of the viviparous freshwater snail Tylomelania sarasinorum (Caenogastropoda: Cerithioidea)
Mitochondrial DNA Part B: Resources 1:330-331.
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Distribution and classification of serine β-lactamases in Brazilian hospital sewage and other environmental metagenomes deposited in public databases
Frontiers in Microbiology 10.3389/fmicb.2016.01790.
[61] Wurzbacher C, Warthmann N, Bourne E, Attermeyer K, Allgaier M, Powell JR, Detering H, Mbedi S, Grossart H-P, Monaghan MT (2016)
High habitat-specificity in fungal communities in oligo-mesotrophic, temperate Lake Stechlin (North-East Germany).
MycoKeys 16:17-44.
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Lack of polymorphism at the MC1R wild-type allele and evidence of domestic allele introgression across European wild boar populations
Mammalian Biology – Zeitschrift für Säugetierkunde 81:477-479.
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Molecular phylogeny and timing of diversification in Alpine Rhithrogena (Ephemeroptera: Heptageniidae).
BMC Evolutionary Biology 16:194.
[58] Uliano-Silva M, Americo JA, Costa I, Schomaker-Bastos A, Rebelo MD, Prosdocimi F (2016)
The complete mitochondrial genome of the golden mussel Limnoperna fortunei and comparative mitogenomics of Mytilidae.
Gene 577:202-208.
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Paternal heat exposure causes DNA methylation and gene expression changes of Stat3 in Wild guinea pig sons.
Ecology and Evolution 6:2657-2666.
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Metaxa2 Diversity Tools: Easing microbial community analysis with Metaxa2.
Ecological Informatics 33:45-50.
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Antimicrobial defence and persistent infection in insects revisited.
Philosophical Transactions of the Royal Society B 371:20150296.
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Evidence for selection maintaining MHC diversity in a rodent species despite strong density fluctuations.
Immunogenetics 68:429-437.
[53] Marmesat E, Soriano L, Mazzoni CJ, Sommer S, Godoy JA (2016)
PCR strategies for complete allele calling in multigene families using high-throughput sequencing approaches.
PLoS One 11:e0157402.
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Genomic signatures of experimental adaptation to antimicrobial peptides in Staphylococcus aureus.
G3-Genes Genomes Genetics 6:1535-1539.
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Redox stability regulates community structure of active microbes at the sediment-water interface.
Environmental Microbiology Reports 8:798-804.
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Comprehensive profiling of retroviral integration sites using target enrichment methods from historical koala samples without an assembled reference genome.
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Daphnia parasite dynamics across multiple Caullerya epidemics indicate selection against common parasite genotypes.
Zoology 10.1016/j.zool.2016.04.003.
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Genetic diversity of two Daphnia-infecting microsporidian parasites, based on sequence variation in the internal transcribed spacer region.
Parasites and Vectors 9:293.
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A genes eye view of ontogeny: De novo assembly and profiling of the Gryllus rubens transcriptome.
Molecular Ecology Resources 16:1478–1490.
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Sequence diversity between class I MHC loci of African native and introduced Bos taurus cattle in Theileria parva endemic regions: in silico peptide binding prediction identifies distinct functional clusters.
Immunogenetics 68:339-352.
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Paternal intergenerational epigenetic response to heat exposure in male Wild guinea pigs.
Molecular Ecology 25:1729–1740.
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Picoplankton bloom in Global South? A high fraction of aerobic anoxygenic phototrophic bacteria in metagenomes from a Coastal Bay (Arraial do Cabo-Brazil).
OMICS: A Journal of Integrative Biology 20:76-87.
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Endogenous gibbon ape leukemia virus identified in a rodent (Melomys burtoni subsp.) from Wallacea (Indonesia)
Journal of Virology 90:8169-8180.
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Bats, primates, and the evolutionary origins and diversification of mammalian gammaherpesviruses
mBio 7:e01425-16.
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Sex-specific gene expression in the mosquito Culex pipiens f. molestus in response to artificial light at night.
BMC Genomics 17:22.
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MHC-dependent mate choice is linked to a trace-amine-associated receptor gene in a mammal.
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4P: fast computing of population genetics statistics from large DNA polymorphism panels.
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Metabarcoding vs. morphological identification to assess diatom diversity in environmental studies.
Molecular Ecology Resources 15:526-542.
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Significant N2 fixation by heterotrophs, photoheterotrophs and heterocystous cyanobacteria in two temperate estuaries.
The ISME Journal 9:273-285.
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FEMS Microbiology Letters 362:fnv105.
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Particle-associated differ from free-living bacteria in surface waters of the Baltic Sea.
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Insights into the effects of serpentine soil conditions on the community composition of fungal symbionts in the roots of Onosma echioides.
Soil Biology and Biochemistry 81:1-8.
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Microbial Response to experimentally controlled redox transitions at the sediment water interface.
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Spatial pattern of adaptive and neutral genetic diversity across different biomes in the lesser anteater (Tamandua tetradactyla).
Ecology and Evolution 21:4932–4948.
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Endogenous murine leukemia retroviral variation across wild European and inbred strains of house mouse.
BMC Genomics 16:613.
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A population genomic scan in Chorthippus grasshoppers unveils previously unknown phenotypic divergence.
Molecular Ecology 24:3918-3930.
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A novel endogenous betaretrovirus in the commmon vampire bat (Desmondus rotundus) suggests multiple independent infection and cross-species transmission events.
Journal of Virology 89:5180-5184.
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The transcriptome of Lutzomyia longipalpis (Diptera: Psychodidae) male reproductive organs.
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[1] Mayer J, Mazzoni CJ, Greenwood AD (2012)
Comparing PreXMRV-2 gag sequence diversity in laboratory and wild mice using deep sequencing.
Virus Research 169:30-37.